Research Library

Select publications from our Regional Comprehensive Metabolomics Resource Cores (RCMRC)s, Data Repository and Coordinating Center (DRCC), and the Metabolomics Community

Michigan Regional Comprehensive Metabolomics Resource Core (MRC)2

Mol Cell Endocrinol. 2013 May 22;371(1-2):201-7. PMID: 23333773; PMC3625452.

Developmental programming: impact of prenatal testosterone excess on insulin sensitivity, adiposity, and free fatty acid profile in postpubertal female sheep. Endocrinology. 2013 May;154(5):1731-42. PubMed PMID: 23525243.

HR-MAS NMR Tissue Metabolomic Signatures Cross-validated by Mass Spectrometry Distinguish Bladder Cancer from Benign Disease. J Proteome Res. 2013 Jul 5;12(7):3519-28. PMID: 23731241 PMC3722911.

Network motifs provide signatures that characterize metabolism. Mol Biosyst. 2013 Mar;9(3):352-60. PubMed PMID: 23287894; PMC3619197.

β-cell metabolome response to glucose-stimulated insulin secretion. J. Biol. Chem. 288: 10923-10935. PMID: 23426361; PMC3624472

Integrated Phosphoproteomic and Metabolomic Profiling Reveals NPM-ALK- Mediated Phosphorylation of PKM2 and Metabolic Reprogramming in Anaplastic Large Cell Lymphoma. Blood. 2013 Aug 8;122(6):958-68 PMID: 23814019; PMC3739039

Untargeted LC-MS Metabolomics of Bronchoalveolar Lavage Fluid Differentiates Acute Respiratory Distress Syndrome from Health. J Proteome Res. Dec 9. [Epub ahead of print] PMID: 24289193

Uremic solutes and risk of end-stage renal disease in type 2 diabetes: metabolomic study. Kidney Int. Jan 15. doi: 10.1038/ki.2013.497. [Epub ahead of print]. PMID: 24429397.

Decreased glycolytic and tricarboxylic acid cycle intermediates coincide with peripheral nervous system oxidative stress in a murine model of type 2 diabetes. J Endocrinol. Jan 2;216(1):1-11. PMID:23086140; PMC3665007

NIH West Coast Metabolomics Center at UC Davis

Dietary Long-Chain Omega-3 Fatty Acids do not Diminish Eosinophilic Pulmonary Inflammation in Mice.
American journal of respiratory cell and molecular biology (2013). PMID: 24134486
DOI: 10.1165/rcmb.2013-0136OC

Individual variation in lipidomic profiles of healthy subjects in response to omega-3 Fatty acids.
PloS one 8, no. 10 (2013): e76575.
DOI: 10.1371/journal.pone.0076575

Improved Metabolic Health Alters Host Metabolism in Parallel with Changes in Systemic Xeno-Metabolites of Gut Origin. PloS one, 9(1), e84260.
DOI: 10.1371/journal.pone.0084260

Treatment of mice with 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin markedly increases the levels of a number of cytochrome P450 metabolites of omega-3 polyunsaturated fatty acids in the liver and lung.
J Toxicol Sci 38 (2013): 833-836.
PMID: 24213002

Preparation of 20-HETE using multifunctional enzyme type 2-negative Starmerella bombicola.
Journal of lipid research 54, no. 11 (2013): 3215-3219.
DOI: 10.1194/jlr.D042226

Nutritional lipidomics: Molecular metabolism, analytics, and diagnostics.
Molecular nutrition & food research 57, no. 8 (2013): 1319-1335.
DOI: 10.1002/mnfr.201200808

Human Milk Secretory Immunoglobulin A and Lactoferrin N-Glycans Are Altered in Women with Gestational Diabetes Mellitus.
The Journal of nutrition 143, no. 12 (2013): 1906-1912.
DOI: 10.3945/jn.113.180695

Soluble Epoxide Hydrolase Deficiency Inhibits Dextran Sulfate Sodium-induced Colitis and Carcinogenesis in Mice.
Anticancer research 33, no. 12 (2013): 5261-5271. PMID: 24324059

LipidBlast in silico tandem mass spectrometry database for lipid identification.
Nature methods 10, no. 8 (2013): 755-758.
DOI: 10.1038/nmeth.2551

Tilapia (Oreochromis mossambicus) brain cells respond to hyperosmotic challenge by inducing myo-inositol biosynthesis.
The Journal of experimental biology 216, no. 24 (2013): 4615-4625.
DOI: 10.1242/jeb.088906

Modulation of blood oxylipin levels by long-chain omega-3 fatty acid supplementation in hyper-and normolipidemic men.
Prostaglandins, Leukotrienes and Essential Fatty Acids (PLEFA) (2013).
DOI: 10.1016/j.plefa.2013.12.008

Anti-inflammatory Effects of Omega-3 Polyunsaturated Fatty Acids and Soluble Epoxide Hydrolase Inhibitors in Angiotensin-II Dependent Hypertension.
Journal of cardiovascular pharmacology (2013).
DOI: 10.1097/FJC.0b013e318298e460

NIH Eastern Regional Comprehensive Metabolomics Resource Core at UNC Chapel Hill

A Systems Biology Approach Utilizing a Mouse Diversity Panel Identifies Genetic Differences Influencing Isoniazid-Induced Microvesicular Steatosis. Tox. Sci. 10.1093/toxsci/kfu094.

Analysis of Human Serum and Whole Blood for Mineral Content by ICP-MS and ICP-OES: Development of a Mineralomics Method. Biological Trace Element Research.
Biol Trace Elem Res. 2014 Jul;160(1):132-42. doi: 10.1007/s12011-014-0033-5. Epub 2014 Jun 11.
PMID: 24917052

Southeast Center for Integrated Metabolomics (SECIM)

Crosstalk between branched chain amino acids and hepatic mitochondria is compromised in nonalcoholic fatty liver disease.
Am J Physiol Endocrinol Metab. 2015 Jun 9:ajpendo.00161.2015. [Epub ahead of print]
DOI: 10.1152/ajpendo.00161.2015 PMID: 26058864

MALDI Mass Spectrometric Imaging of the Nematode Caenorhabditis elegans
Current Metabolomics ISSN (Print): 2213-235X ISSN (Online): 2213-2368 VOLUME: 3 ISSUE: 2
DOI: 10.2174/2213235X03666150525223412

Liquid Chromatography-Mass Spectrometry Metabolic and Lipidomic Sample Preparation Workflow for Suspension-Cultured Mammalian Cells using Jurkat T lymphocyte Cells
Journal of Proteomics & Bioinformatics
DOI: 10.4172/jpb.1000360

Divisions of labor in the thiamin biosynthetic pathway among organs of maize.
Front Plant Sci. 2014 Aug 4;5:370. eCollection 2014.
DOI: 10.3389/fpls.2014.00370 PMID: 25136345

Targeted metabolomics and mathematical modeling demonstrate that vitamin B-6 restriction alters one-carbon metabolism in cultured HepG2 cells.
Am J Physiol Endocrinol Metab. 2014 Jul 1;307(1):E93-101. Epub 2014 May 13.
DOI: 10.1152/ajpendo.00697.2013. PMID: 24824655

Association of Branched and Aromatic Amino Acids Levels with Metabolic Syndrome and Impaired Fasting Glucose in Hypertensive Patients.
DOI: 10.1089/met.2014.0132 PMID: 25664967

Metabolomic Analysis of Oxidative and Glycolytic Skeletal Muscles by Matrix-Assisted Laser Desorption/IonizationMass Spectrometric Imaging (MALDI MSI).
DOI: 10.1007/s13361-015-1133-y PMID: 25893271

A 1H NMR-based approach to investigate metabolomic differences in the plasma and urine of young women after cranberry juice or apple juice consumption.
DOI: 10.1016/j.jff.2015.01.018

Unified and Isomer-specific NMR Metabolomics Database for the Accurate Analysis of 13C-1H HSQC Spectra
ACS Chem Biol. 2014 Nov 5. [Epub ahead of print]
PMID: 25333826

A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis
Biochem J. 2014 Nov 28. [Epub ahead of print]
PMID: 25431972

Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster
Evolution. 2014 Oct 11. doi: 10.1111/evo.12541. [Epub ahead of print]
PMID: 25308124

Isotopic ratio outlier analysis global metabolomics of Caenorhabditis elegans.
Anal Chem. 2013 Dec 17;85(24):11858-65. Epub 2013 Dec 4.
doi: 10.1021/ac4025413
PMID: 24274725

13C NMR Metabolomics: Applications at Natural Abundance
Anal. Chem. 2014, 86, 9242−9250.
doi: 10.1021/ac502346h
PMID: 25140385

Customized Metabolomics Database for the Analysis of NMR 1H−1H TOCSY and 13C−1H HSQC-TOCSY Spectra of Complex Mixtures
Anal. Chem. 2014, 86, 5494−5501
doi: 10.1021/ac500979g
PMID: 24773139

Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine
Biochem. J. (2014) 463, 145–155
doi: 10.1042/BJ20140522
PMID: 25014715

Data Repository and Coordinating Center (DRCC)

Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
Nucl. Acids Res. (2015)
doi: 10.1093/nar/gkv1042

Select publications from the Metabolomics Community

Data standards can boost metabolomics research, and if there is a will, there is a way.
Metabolomics. 2016;12(1):14. Epub 2015 Nov 17.
doi: 10.1007/s11306-015-0879-3