RefMet Compound Details

MW structure37540 (View MW Metabolite Database details)
RefMet namedUDP
Systematic name[({[(2R,3S,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILESc1cn([C@H]2C[C@@H]([C@@H](COP(=O)(O)OP(=O)(O)O)O2)O)c(=O)[nH]c1=O   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass388.007289 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC9H14N2O11P2View other entries in RefMet with this formula
InChIInChI=1S/C9H14N2O11P2/c12-5-3-8(11-2-1-7(13)10-9(11)14)21-6(5)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,10,13,
14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKeyQHWZTVCCBMIIKE-SHYZEUOFSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassNucleic acids
Main ClassPyrimidines
Sub ClassPyrimidine dNDP
Pubchem CID145729
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving dUDP

Rxn IDKEGG ReactionEnzyme
R02018 dUDP + Thioredoxin disulfide + H2O <=> Thioredoxin + UDP2'-Deoxyuridine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
R02098 ATP + dUMP <=> ADP + dUDPATP:dUMP phosphotransferase
R02330 dUTP + H2O <=> dUDP + OrthophosphatedUTP nucleotidohydrolase
R02331 ATP + dUDP <=> ADP + dUTPATP:dUDP phosphotransferase

Table of KEGG human pathways containing dUDP

Pathway IDHuman Pathway# of reactions
hsa00240 Pyrimidine metabolism 3
hsa01100 Metabolic pathways 1
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