RefMet Compound Details

MW structure37523 (View MW Metabolite Database details)
RefMet namedGDP
Systematic name[({[(2R,3S,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILESC1[C@@H]([C@@H](COP(=O)(O)OP(=O)(O)O)O[C@H]1n1cnc2c1nc(N)[nH]c2=O)O   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass427.029421 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC10H15N5O10P2View other entries in RefMet with this formula
InChIKeyCIKGWCTVFSRMJU-KVQBGUIXSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassNucleic acids
Main ClassPurines
Sub ClassPurine dNDP
Pubchem CID135398595
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving dGDP

Rxn IDKEGG ReactionEnzyme
R01857 ATP + dGDP <=> ADP + dGTPATP:dGDP phosphotransferase
R01858 dGTP + Pyruvate <=> dGDP + PhosphoenolpyruvatedGTP:pyruvate 2-O-phosphotransferase
R02019 dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin2'-Deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
R02090 ATP + dGMP <=> ADP + dGDPATP:dGMP phosphotransferase

Table of KEGG human pathways containing dGDP

Pathway IDHuman Pathway# of reactions
hsa00230 Purine metabolism 4