RefMet Compound Details

MW structure37659 (View MW Metabolite Database details)
RefMet nameGDP
Systematic name[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILESC([C@@H]1[C@H]([C@H]([C@H](n2cnc3c2nc(N)[nH]c3=O)O1)O)O)OP(=O)(O)OP(=O)(O)O   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass443.024336 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC10H15N5O11P2View other entries in RefMet with this formula
InChIKeyQGWNDRXFNXRZMB-UUOKFMHZSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassNucleic acids
Main ClassPurines
Sub ClassPurine rNDP
Pubchem CID135398619
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving GDP

Rxn IDKEGG ReactionEnzyme
R00332 ATP + GMP <=> ADP + GDPATP:GMP phosphotransferase
R00330 ATP + GDP <=> ADP + GTPATP:GDP phosphotransferase
R02019 dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin2'-Deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
R00430 GTP + Pyruvate <=> GDP + PhosphoenolpyruvateGTP:pyruvate 2-O-phosphotransferase
R00328 GDP + H2O <=> GMP + OrthophosphateGDP phosphohydrolase
R00335 GTP + H2O <=> GDP + OrthophosphateGTP phosphohydrolase
R00336 Guanosine 3',5'-bis(diphosphate) + H2O <=> GDP + Diphosphateguanosine-3',5'-bis(diphosphate) 3'-diphosphohydrolase

Table of KEGG human pathways containing GDP

Pathway IDHuman Pathway# of reactions
hsa00230 Purine metabolism 7