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RefMet Classification (as of 12/05/24)
Click on main class/sub class links to view RefMet metabolites. Click on Core links to view core structures which define those classes.
Super class
Main class
Sub class(# metabolites)
Core
?
Alkaloids
Alkaloids
Other alkaloids(80)
-
Alkaloids
Anthranilic acid alkaloids
Acridone alkaloids(29)
View
Alkaloids
Anthranilic acid alkaloids
Benzodiazepine alkaloids(26)
View
Alkaloids
Anthranilic acid alkaloids
Phenazine alkaloids(4)
View
Alkaloids
Anthranilic acid alkaloids
Quinazoline alkaloids(19)
View
Alkaloids
Anthranilic acid alkaloids
Quinoline alkaloids(9)
View
Alkaloids
Histidine alkaloids
Imidazole alkaloids(43)
View
Alkaloids
Lysine alkaloids
Piperidine alkaloids(11)
View
Alkaloids
Lysine alkaloids
Quinolizidine alkaloids(8)
-
Alkaloids
Ornithine alkaloids
Polyamines(26)
-
Alkaloids
Ornithine alkaloids
Pyrrolidine alkaloids(12)
View
Alkaloids
Ornithine alkaloids
Pyrrolizidine alkaloids(5)
View
Alkaloids
Ornithine alkaloids
Tropane alkaloids(21)
View
Alkaloids
Pyridine alkaloids
Nicotinic acid alkaloids(149)
View
Alkaloids
Pyridine alkaloids
Pyridine alkaloids(3)
-
Alkaloids
Tryptophan alkaloids
3-Alkylindoles(10)
-
Alkaloids
Tryptophan alkaloids
Aspidosperma type(5)
View
Alkaloids
Tryptophan alkaloids
Carbazole alkaloids(10)
View
Alkaloids
Tryptophan alkaloids
Carboline alkaloids(34)
View
Alkaloids
Tryptophan alkaloids
Cinchona alkaloids(8)
-
Alkaloids
Tryptophan alkaloids
Ergot alkaloids(7)
-
Alkaloids
Tryptophan alkaloids
Indoleacetic acids(9)
View
Alkaloids
Tryptophan alkaloids
Indoleacrylic acids(1)
-
Alkaloids
Tryptophan alkaloids
Indolecarboxylic acids(25)
View
Alkaloids
Tryptophan alkaloids
Indolines(15)
View
Alkaloids
Tryptophan alkaloids
Indolocarbazoles(2)
View
Alkaloids
Tryptophan alkaloids
N-alkylindoles(2)
-
Alkaloids
Tryptophan alkaloids
Pyrroloindoles(7)
View
Alkaloids
Tryptophan alkaloids
Pyrroloquinoline alkaloids(4)
View
Alkaloids
Tryptophan alkaloids
Simple indole alkaloids(45)
View
Alkaloids
Tryptophan alkaloids
Strychnos alkaloids(7)
View
Alkaloids
Tryptophan alkaloids
Tryptamines(21)
View
Alkaloids
Tyrosine alkaloids
Amarylidaceae alkaloids(7)
View
Alkaloids
Tyrosine alkaloids
Aporphine alkaloids(7)
View
Alkaloids
Tyrosine alkaloids
Benzophenanthridine alkaloids(8)
View
Alkaloids
Tyrosine alkaloids
Betalains(10)
-
Alkaloids
Tyrosine alkaloids
Isoquinoline alkaloids(42)
View
Alkaloids
Tyrosine alkaloids
Morphinan alkaloids(23)
View
Alkaloids
Tyrosine alkaloids
Oxazole alkaloids(1)
View
Alkaloids
Tyrosine alkaloids
Phenylethylamines(41)
View
Alkaloids
Tyrosine alkaloids
Protoberberine alkaloids(10)
View
Alkaloids
Tyrosine alkaloids
Tropolone alkaloids(1)
-
Benzenoids
Anilides
Anilides(20)
-
Benzenoids
Anilines
Anilines(18)
View
Benzenoids
Benzaldehydes
Hydroxybenzaldehydes(9)
-
Benzenoids
Benzamides
Benzamides(7)
View
Benzenoids
Benzamides
Hippuric acids(20)
View
Benzenoids
Benzamides
Salicylamides(3)
View
Benzenoids
Benzenediols
Catechols(20)
View
Benzenoids
Benzenediols
Methoxyphenols(1)
-
Benzenoids
Benzenes
Acylaminobenzoic acids(6)
-
Benzenoids
Benzenes
Aminobenzoic acids(15)
-
Benzenoids
Benzenes
Amphetamines(5)
-
Benzenoids
Benzenes
Benzenesulfonamides(8)
View
Benzenoids
Benzenes
Benzenesulfonic acids(10)
View
Benzenoids
Benzenes
Benzenesulfonyl compounds(46)
-
Benzenoids
Benzenes
Benzenetriols(2)
-
Benzenoids
Benzenes
Benzoic acid esters(12)
-
Benzenoids
Benzenes
Benzoic acids(48)
View
Benzenoids
Benzenes
Benzonitriles(2)
-
Benzenoids
Benzenes
Benzophenones(23)
View
Benzenoids
Benzenes
Benzoyl derivatives(7)
-
Benzenoids
Benzenes
Benzyl alcohols(8)
View
Benzenoids
Benzenes
Benzyl cyanides(8)
View
Benzenoids
Benzenes
Benzylethers(9)
-
Benzenoids
Benzenes
Benzyloxycarbonyls(3)
-
Benzenoids
Benzenes
Bisphenols(6)
-
Benzenoids
Benzenes
Cumenes(11)
View
Benzenoids
Benzenes
Dichlorobenzoic acids(1)
-
Benzenoids
Benzenes
Diphenylethers(14)
View
Benzenoids
Benzenes
Diphenylmethanes(54)
View
Benzenoids
Benzenes
Hydroxybenzaldehydes(1)
-
Benzenoids
Benzenes
Hydroxybenzoic acid esters(3)
-
Benzenoids
Benzenes
Hydroxybenzoic acids(148)
-
Benzenoids
Benzenes
Nitrobenzenes(20)
View
Benzenoids
Benzenes
N-phenylureas(15)
View
Benzenoids
Benzenes
Other benzenes(114)
-
Benzenoids
Benzenes
Phenanthrols(13)
View
Benzenoids
Benzenes
Phenoxy compounds(5)
-
Benzenoids
Benzenes
Phenylbutylamines(7)
View
Benzenoids
Benzenes
Phenylethylamines(5)
View
Benzenoids
Benzenes
Phenylpropanes(26)
View
Benzenoids
Benzenes
Phenylpyruvic acids(4)
View
Benzenoids
Benzenes
Phthalate esters(52)
-
Benzenoids
Benzenes
Phthalic acids(3)
View
Benzenoids
Benzenes
Toluenes(12)
View
Benzenoids
Benzenes
Trifluoromethylbenzenes(8)
-
Benzenoids
Bisphenyls
Bisphenyls(1)
-
Benzenoids
Bisphenyls
Other bisphenyls(22)
View
Benzenoids
Bisphenyls
Polybrominated biphenyls(2)
-
Benzenoids
Bisphenyls
Polychlorinated biphenyls(7)
-
Benzenoids
Chrysenes
Chrysenes(6)
-
Benzenoids
Diarylethers
Diarylethers(7)
-
Benzenoids
Dibenzocycloheptenes
Dibenzocycloheptenes(4)
-
Benzenoids
Diphenylethers
Bromodiphenyl ethers(20)
-
Benzenoids
Fluorenes
Fluorenes(16)
View
Benzenoids
Halobenzenes
Bromobenzenes(3)
-
Benzenoids
Halobenzenes
Chlorobenzenes(33)
-
Benzenoids
Halobenzenes
Dichlorobenzenes(2)
-
Benzenoids
Halobenzenes
Fluorobenzenes(1)
-
Benzenoids
Indanes
Indanes(6)
View
Benzenoids
Indanones
Indanones(4)
View
Benzenoids
Naphthacenes
Naphthacenes(2)
View
Benzenoids
Naphthacenes
Tetracenequinones(9)
-
Benzenoids
Naphthalenes
Naphthalenes(51)
View
Benzenoids
Naphthalenes
Naphthols(17)
View
Benzenoids
Phenanthrolines
Phenanthrolines(4)
View
Benzenoids
Phenols
Acylphloroglucinols(3)
-
Benzenoids
Phenols
Aminophenols(13)
-
Benzenoids
Phenols
Anisoles(13)
View
Benzenoids
Phenols
Benzenetriols(13)
-
Benzenoids
Phenols
Chlorophenols(9)
-
Benzenoids
Phenols
Halophenols(8)
-
Benzenoids
Phenols
Methoxyphenols(22)
-
Benzenoids
Phenols
Nitrophenols(6)
-
Benzenoids
Phenols
Other phenols(53)
View
Benzenoids
Phenols
Phenol esters(3)
-
Benzenoids
Phenols
Phenol ethers(24)
-
Benzenoids
Phenoxyacetic acids
Phenoxyacetic acids(4)
-
Benzenoids
Phenylacetic acids
Phenylacetic acids(9)
-
Benzenoids
Phenylpropenes
Phenylpropenes(6)
-
Benzenoids
Phenylpropylamines
Phenylpropylamines(9)
-
Carbohydrates
Disaccharides
Amino disaccharides(5)
-
Carbohydrates
Disaccharides
Disaccharides(27)
View
Carbohydrates
Glycosyl compounds
Cyanogenic glycosides(16)
-
Carbohydrates
Glycosyl compounds
Glycosylamines(2)
-
Carbohydrates
Glycosyl compounds
Glycosyl compounds(15)
-
Carbohydrates
Glycosyl compounds
Glycosylglycerols(2)
-
Carbohydrates
Glycosyl compounds
Thioglycosides(1)
-
Carbohydrates
Monosaccharides
Amino sugars(44)
-
Carbohydrates
Monosaccharides
Glucosinolates(30)
-
Carbohydrates
Monosaccharides
Heptoses(2)
-
Carbohydrates
Monosaccharides
Hexose phosphates(25)
-
Carbohydrates
Monosaccharides
Hexoses(41)
View
Carbohydrates
Monosaccharides
Monosaccharide phosphates(8)
-
Carbohydrates
Monosaccharides
Monosaccharides(21)
-
Carbohydrates
Monosaccharides
Pentose phosphates(20)
-
Carbohydrates
Monosaccharides
Pentoses(20)
View
Carbohydrates
Monosaccharides
Sugar acids(62)
-
Carbohydrates
Monosaccharides
Sugar alcohols(19)
-
Carbohydrates
Monosaccharides
Tetroses(3)
-
Carbohydrates
Monosaccharides
Trioses(2)
-
Carbohydrates
Oligosaccharides
Oligosaccharides(20)
-
Fatty Acyls
Docosanoids
Docosanoids(55)
-
Fatty Acyls
Eicosanoids
Clavulones(10)
-
Fatty Acyls
Eicosanoids
EpETrE(19)
-
Fatty Acyls
Eicosanoids
HEPE(53)
-
Fatty Acyls
Eicosanoids
Hepoxilins(4)
-
Fatty Acyls
Eicosanoids
HETE(70)
-
Fatty Acyls
Eicosanoids
HETrE(16)
-
Fatty Acyls
Eicosanoids
Isoprostanes(26)
-
Fatty Acyls
Eicosanoids
Leukotrienes(40)
-
Fatty Acyls
Eicosanoids
Levuglandins(2)
-
Fatty Acyls
Eicosanoids
Lipoxins(8)
-
Fatty Acyls
Eicosanoids
Other Eicosanoids(15)
-
Fatty Acyls
Eicosanoids
Prostaglandins(170)
View
Fatty Acyls
Eicosanoids
Thromboxanes(16)
-
Fatty Acyls
Fatty acids
Amino FA(43)
-
Fatty Acyls
Fatty acids
Branched FA(72)
-
Fatty Acyls
Fatty acids
Carbocyclic FA(11)
-
Fatty Acyls
Fatty acids
Dicarboxylic acids(132)
-
Fatty Acyls
Fatty acids
Epoxy FA(2)
-
Fatty Acyls
Fatty acids
Fatty acids(12)
-
Fatty Acyls
Fatty acids
Fatty esters(11)
-
Fatty Acyls
Fatty acids
Halogenated FA(17)
-
Fatty Acyls
Fatty acids
Heterocyclic FA(8)
-
Fatty Acyls
Fatty acids
Hydroxy FA(339)
-
Fatty Acyls
Fatty acids
Keto FA(2)
-
Fatty Acyls
Fatty acids
Methoxy FA(8)
-
Fatty Acyls
Fatty acids
Methyl FA(2)
-
Fatty Acyls
Fatty acids
Mycolic acids(1)
-
Fatty Acyls
Fatty acids
Nitro FA(5)
-
Fatty Acyls
Fatty acids
Oxo FA(74)
-
Fatty Acyls
Fatty acids
Saturated FA(45)
-
Fatty Acyls
Fatty acids
Thia FA(10)
-
Fatty Acyls
Fatty acids
Unsaturated FA(345)
-
Fatty Acyls
Fatty acyl glycosides
Fatty acyl glycosides(11)
-
Fatty Acyls
Fatty acyl glycosides
Sophorolipids(2)
-
Fatty Acyls
Fatty alcohols
Fatty alcohols(87)
-
Fatty Acyls
Fatty aldehydes
Fatty aldehydes(52)
-
Fatty Acyls
Fatty amides
Fatty acyl homoserine lactones(4)
-
Fatty Acyls
Fatty amides
N-acyl amines(1375)
-
Fatty Acyls
Fatty amides
NAE(92)
-
Fatty Acyls
Fatty amides
NAGly(2)
-
Fatty Acyls
Fatty amides
NAOrn(379)
-
Fatty Acyls
Fatty amides
Primary amides(23)
-
Fatty Acyls
Fatty amines
Monoalkylamines(21)
-
Fatty Acyls
Fatty esters
Acyl carnitines(308)
-
Fatty Acyls
Fatty esters
Acyl CoAs(284)
-
Fatty Acyls
Fatty esters
FAHFA(14719)
-
Fatty Acyls
Fatty esters
Fatty lactones(14)
-
Fatty Acyls
Fatty esters
Short fatty esters(54)
-
Fatty Acyls
Fatty esters
Wax diesters(12)
-
Fatty Acyls
Fatty esters
Wax monoesters(203)
-
Fatty Acyls
Fatty ethers
Fatty ethers(2)
-
Fatty Acyls
Fatty nitriles
Fatty nitriles(2)
-
Fatty Acyls
Hydrocarbons
Hydrocarbons(84)
-
Fatty Acyls
Hydrocarbons
Oxygenated hydrocarbons(49)
-
Fatty Acyls
Hydrocarbons
Unsaturated aliphatic hydrocarbons(1)
-
Fatty Acyls
Octadecanoids
12-oxophytodienoic acids(5)
-
Fatty Acyls
Octadecanoids
DiHODA(1)
-
Fatty Acyls
Octadecanoids
DiHODE(12)
-
Fatty Acyls
Octadecanoids
DiHOME(7)
-
Fatty Acyls
Octadecanoids
DiHOTrE(2)
-
Fatty Acyls
Octadecanoids
EpODA(4)
-
Fatty Acyls
Octadecanoids
EpODE(12)
-
Fatty Acyls
Octadecanoids
EpOME(8)
-
Fatty Acyls
Octadecanoids
HODA(9)
-
Fatty Acyls
Octadecanoids
HODE(21)
-
Fatty Acyls
Octadecanoids
HOME(4)
-
Fatty Acyls
Octadecanoids
HOTE(3)
-
Fatty Acyls
Octadecanoids
HOTrE(8)
-
Fatty Acyls
Octadecanoids
HpODE(14)
-
Fatty Acyls
Octadecanoids
HpOME(8)
-
Fatty Acyls
Octadecanoids
HpOTrE(9)
-
Fatty Acyls
Octadecanoids
Jasmonic acids(11)
View
Fatty Acyls
Octadecanoids
KODA(6)
-
Fatty Acyls
Octadecanoids
KODE(5)
-
Fatty Acyls
Octadecanoids
KOTrE(2)
-
Fatty Acyls
Octadecanoids
Other Octadecanoids(9)
-
Fatty Acyls
Octadecanoids
TriHODE(2)
-
Fatty Acyls
Octadecanoids
TriHOME(6)
-
Fatty Acyls
Other Fatty Acyls
Other Fatty Acyls(1)
-
Glycerolipids
Diradylglycerols
DAG(2428)
View
Glycerolipids
Diradylglycerols
Di-O-DAG(1)
-
Glycerolipids
Diradylglycerols
O-DG(1356)
View
Glycerolipids
Diradylglycerols
Other GL(1)
-
Glycerolipids
Glycosyldiradylglycerols
DGDG(1779)
-
Glycerolipids
Glycosyldiradylglycerols
MGDG(1837)
-
Glycerolipids
Glycosyldiradylglycerols
O-DGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
O-MGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
O-SMGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
SQDG(1114)
-
Glycerolipids
Glycosylmonoradylglycerols
DGMG(166)
-
Glycerolipids
Glycosylmonoradylglycerols
MGMG(174)
-
Glycerolipids
Glycosylmonoradylglycerols
SQMG(162)
-
Glycerolipids
Monoradylglycerols
MAG(163)
View
Glycerolipids
Monoradylglycerols
O-MG(12)
View
Glycerolipids
Other Glycerolipids
DGCC(1794)
-
Glycerolipids
Other Glycerolipids
DGGA(1110)
-
Glycerolipids
Other Glycerolipids
DGTS(1832)
-
Glycerolipids
Other Glycerolipids
MGCC(161)
-
Glycerolipids
Other Glycerolipids
MGGA(161)
-
Glycerolipids
Other Glycerolipids
MGTS(161)
-
Glycerolipids
Triradylglycerols
O-TG(257)
View
Glycerolipids
Triradylglycerols
TAG(33957)
View
Glycerophospholipids
Cardiolipins
CL(2086)
View
Glycerophospholipids
CDP-Glycerols
CDP-diacylglycerols(1)
-
Glycerophospholipids
Glycerophosphates
LPA(104)
-
Glycerophospholipids
Glycerophosphates
O-LPA(35)
-
Glycerophospholipids
Glycerophosphates
O-PA(3230)
-
Glycerophospholipids
Glycerophosphates
Ox-LPA(56)
-
Glycerophospholipids
Glycerophosphates
Ox-PA(1566)
-
Glycerophospholipids
Glycerophosphates
PA(2447)
View
Glycerophospholipids
Glycerophosphethanolamines
PE-NMe(77)
-
Glycerophospholipids
Glycerophosphethanolamines
PE-NMe2(77)
-
Glycerophospholipids
Glycerophosphocholines
LPC(243)
-
Glycerophospholipids
Glycerophosphocholines
O-LPC(87)
-
Glycerophospholipids
Glycerophosphocholines
O-PC(4213)
-
Glycerophospholipids
Glycerophosphocholines
Ox-LPC(56)
-
Glycerophospholipids
Glycerophosphocholines
Ox-PC(1570)
-
Glycerophospholipids
Glycerophosphocholines
PC(4331)
View
Glycerophospholipids
Glycerophosphoethanolamines
LNAPE(1110)
-
Glycerophospholipids
Glycerophosphoethanolamines
LPE(183)
-
Glycerophospholipids
Glycerophosphoethanolamines
O-LPE(56)
-
Glycerophospholipids
Glycerophosphoethanolamines
O-PE(3992)
-
Glycerophospholipids
Glycerophosphoethanolamines
Ox-LPE(56)
-
Glycerophospholipids
Glycerophosphoethanolamines
Ox-PE(1571)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE(3324)
View
Glycerophospholipids
Glycerophosphoethanolamines
PE-NAc(1)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE-NMe(7)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE-NMe2(20)
-
Glycerophospholipids
Glycerophosphoglycerols
BMP(463)
-
Glycerophospholipids
Glycerophosphoglycerols
HBMP(1168)
-
Glycerophospholipids
Glycerophosphoglycerols
LPG(88)
-
Glycerophospholipids
Glycerophosphoglycerols
LPGP(53)
-
Glycerophospholipids
Glycerophosphoglycerols
O-LPG(82)
-
Glycerophospholipids
Glycerophosphoglycerols
O-LPGP(18)
-
Glycerophospholipids
Glycerophosphoglycerols
O-PG(3316)
-
Glycerophospholipids
Glycerophosphoglycerols
Ox-LPG(56)
-
Glycerophospholipids
Glycerophosphoglycerols
Ox-PG(1568)
-
Glycerophospholipids
Glycerophosphoglycerols
PG(2562)
View
Glycerophospholipids
Glycerophosphoglycerophosphates
PGP(3)
-
Glycerophospholipids
Glycerophosphoglycerophosphoglycerols
DLCL(168)
-
Glycerophospholipids
Glycerophosphoglycerophosphoglycerols
MLCL(363)
-
Glycerophospholipids
Glycerophosphoinositol bisphosphates
LPIP2(71)
-
Glycerophospholipids
Glycerophosphoinositol bisphosphates
PIP2(174)
-
Glycerophospholipids
Glycerophosphoinositolglycans
LPIM1(38)
-
Glycerophospholipids
Glycerophosphoinositolglycans
LPIM2(38)
-
Glycerophospholipids
Glycerophosphoinositolglycans
PIM1(131)
-
Glycerophospholipids
Glycerophosphoinositolglycans
PIM2(131)
-
Glycerophospholipids
Glycerophosphoinositol monophosphates
LPIP(53)
-
Glycerophospholipids
Glycerophosphoinositol monophosphates
O-LPIP(18)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP(19)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP2(11)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP3(99)
-
Glycerophospholipids
Glycerophosphoinositols
LPI(97)
-
Glycerophospholipids
Glycerophosphoinositols
O-LPI(34)
-
Glycerophospholipids
Glycerophosphoinositols
O-PI(3150)
-
Glycerophospholipids
Glycerophosphoinositols
Ox-LPI(56)
-
Glycerophospholipids
Glycerophosphoinositols
Ox-PI(1566)
-
Glycerophospholipids
Glycerophosphoinositols
PI(2547)
View
Glycerophospholipids
Glycerophosphoinositols
PIP(94)
-
Glycerophospholipids
Glycerophosphoinositol trisphosphates
LPIP3(71)
-
Glycerophospholipids
Glycerophosphoinositol trisphosphates
PIP3(60)
-
Glycerophospholipids
Glycerophosphoserines
LNAPS(1110)
-
Glycerophospholipids
Glycerophosphoserines
LPS(87)
-
Glycerophospholipids
Glycerophosphoserines
O-LPS(32)
-
Glycerophospholipids
Glycerophosphoserines
O-PS(3211)
-
Glycerophospholipids
Glycerophosphoserines
Ox-LPS(56)
-
Glycerophospholipids
Glycerophosphoserines
Ox-PS(1569)
-
Glycerophospholipids
Glycerophosphoserines
PS(2654)
View
Glycerophospholipids
Glyceropyrophosphates
PPA(35)
-
Glycerophospholipids
Other Glycerophospholipids
LPEth(161)
-
Glycerophospholipids
Other Glycerophospholipids
LPM(161)
-
Glycerophospholipids
Other Glycerophospholipids
Other Glycerophospholipids(1)
-
Glycerophospholipids
Other Glycerophospholipids
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2,4,5-trisubstituted oxazoles(4)
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Oxocins(1)
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Oxolanes(2)
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Phenothiazines(16)
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Pyrazinecarboxamides(5)
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Pyrazines(14)
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Pyrrole carboxylic acids(2)
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Sterols/C26 Bile acids(In-silico)(42)
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Sterols(In silico)(170)
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