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Perform data analysis on HILIC POSITIVE ION MODE dataset in study ST002247
Choose experimental groups (required for Volcano plot, OPLSDA, Random Forest analyses)
Select 2 different experimental groups:
Select only groups with 3 or more replicates listed in parentheses
Group1
host_age:- (20)
host_age:0 months (40)
host_age:10 months (214)
host_age:102 days (1)
host_age:143 days (1)
host_age:15 months (218)
host_age:161 days (1)
host_age:18 months (217)
host_age:189 days (1)
host_age:196 days (1)
host_age:2 months (192)
host_age:210 days (1)
host_age:218 days (1)
host_age:230 days (1)
host_age:24 months (213)
host_age:249 days (1)
host_age:261 days (1)
host_age:283 days (1)
host_age:300 days (1)
host_age:316 days (1)
host_age:332 days (1)
host_age:333 days (1)
host_age:337 days (1)
host_age:349 days (1)
host_age:375 days (1)
host_age:377 days (1)
host_age:396 days (1)
host_age:401 days (1)
host_age:403 days (1)
host_age:408 days (1)
host_age:429 days (1)
host_age:431 days (1)
host_age:446 days (1)
host_age:457 days (1)
host_age:459 days (1)
host_age:467 days (1)
host_age:48 days (1)
host_age:485 days (1)
host_age:487 days (1)
host_age:500 days (1)
host_age:534 days (1)
host_age:576 days (1)
host_age:582 days (1)
host_age:6 months (213)
host_age:608 days (1)
host_age:631 days (1)
host_age:689 days (1)
host_age:715 days (1)
host_age:85 days (1)
Group2
host_age:- (20)
host_age:0 months (40)
host_age:10 months (214)
host_age:102 days (1)
host_age:143 days (1)
host_age:15 months (218)
host_age:161 days (1)
host_age:18 months (217)
host_age:189 days (1)
host_age:196 days (1)
host_age:2 months (192)
host_age:210 days (1)
host_age:218 days (1)
host_age:230 days (1)
host_age:24 months (213)
host_age:249 days (1)
host_age:261 days (1)
host_age:283 days (1)
host_age:300 days (1)
host_age:316 days (1)
host_age:332 days (1)
host_age:333 days (1)
host_age:337 days (1)
host_age:349 days (1)
host_age:375 days (1)
host_age:377 days (1)
host_age:396 days (1)
host_age:401 days (1)
host_age:403 days (1)
host_age:408 days (1)
host_age:429 days (1)
host_age:431 days (1)
host_age:446 days (1)
host_age:457 days (1)
host_age:459 days (1)
host_age:467 days (1)
host_age:48 days (1)
host_age:485 days (1)
host_age:487 days (1)
host_age:500 days (1)
host_age:534 days (1)
host_age:576 days (1)
host_age:582 days (1)
host_age:6 months (213)
host_age:608 days (1)
host_age:631 days (1)
host_age:689 days (1)
host_age:715 days (1)
host_age:85 days (1)
Filtering Parameters
Select threshold % for selection below:
100% (option 4 only)
95%
90%
85%
80%
75%
70%
65%
60%
55%
50%
45%
40%
35%
30%
20%
10%
0%
Option 1:
Filter by Sum
(Analytes whose sum for all samples falls below the threshold % will be excluded)
Option 2:
Filter by Mean
(Analytes whose mean for all samples falls below the threshold % will be excluded)
Option 3:
Filter by Median
(Analytes whose median for all samples falls below the threshold % will be excluded)
Option 4:
Filter by Sample threshold
At least one of the 2 selected groups
Both groups
must exceed the above threshold per analyte
In order for an analyte to be retained, the % of samples in one/both groups which are non-zero must exceed the threshold.
Option 5:
Remove all analytes containing null values
Sample Normalization Parameters
Normalize samples by:
None
Sample means
Sample sums
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