{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST002822","ANALYSIS_ID":"AN004600","VERSION":"1","CREATED_ON":"August 18, 2023, 3:17 pm"},

"PROJECT":{"PROJECT_TITLE":"Effect of ERR Agonist in Mouse Heart Post Pressure Overload","PROJECT_SUMMARY":"The present heart dataset comprises a total of 855 biochemicals, 787 compounds of known identity (named biochemicals) and 68 compounds of unknown structural identity (unnamed biochemicals). The muscle dataset comprises a total of 711 biochemicals, 663 compounds of known identity (named biochemicals) and 48 compounds of unknown structural identity (unnamed biochemicals). Following normalization to mass of sample extracted for heart tissue (equal mass was extracted for muscle tissue samples, so no additional normalization was performed on muscle samples prior to statistical analysis), log transformation and imputation of missing values, if any, with the minimum observed value for each compound, 2-way ANOVA or Welch’s two-sample t-test analyses were used to identify biochemicals that differed significantly between experimental groups. A summary of the numbers of biochemicals that achieved statistical significance (p≤0.05), as well as those approaching significance (0.05<p<0.10), is shown below.","INSTITUTE":"Baylor College of Medicine","LAST_NAME":"Xu","FIRST_NAME":"Weiyi","ADDRESS":"One Baylor Plaza, Houston, TX, 77030-3498, USA","EMAIL":"weiyi.xu@bcm.edu","PHONE":"8322755836"},

"STUDY":{"STUDY_TITLE":"Effect of ERR Agonist in Mouse Heart Post Pressure Overload","STUDY_SUMMARY":"The present heart dataset comprises a total of 855 biochemicals, 787 compounds of known identity (named biochemicals) and 68 compounds of unknown structural identity (unnamed biochemicals). The muscle dataset comprises a total of 711 biochemicals, 663 compounds of known identity (named biochemicals) and 48 compounds of unknown structural identity (unnamed biochemicals). Following normalization to mass of sample extracted for heart tissue (equal mass was extracted for muscle tissue samples, so no additional normalization was performed on muscle samples prior to statistical analysis), log transformation and imputation of missing values, if any, with the minimum observed value for each compound, 2-way ANOVA or Welch’s two-sample t-test analyses were used to identify biochemicals that differed significantly between experimental groups. A summary of the numbers of biochemicals that achieved statistical significance (p≤0.05), as well as those approaching significance (0.05<p<0.10), is shown below.","INSTITUTE":"Baylor College of Medicine","LAST_NAME":"Xu","FIRST_NAME":"Weiyi","ADDRESS":"One Baylor Plaza, Houston, TX, 77030-3498, USA","EMAIL":"weiyi.xu@bcm.edu","PHONE":"8322755836"},

"SUBJECT":{"SUBJECT_TYPE":"Mammal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"WASH-02126",
"Factors":{"Treatment":"Heart tissue vehicle with sham surgery"},
"Additional sample data":{"Sample Name":"Vehicle Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02127",
"Factors":{"Treatment":"Heart tissue vehicle with sham surgery"},
"Additional sample data":{"Sample Name":"Vehicle Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02128",
"Factors":{"Treatment":"Heart tissue vehicle with sham surgery"},
"Additional sample data":{"Sample Name":"Vehicle Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02129",
"Factors":{"Treatment":"Heart tissue vehicle with sham surgery"},
"Additional sample data":{"Sample Name":"Vehicle Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02130",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02131",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02132",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02133",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02134",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02135",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02136",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02137",
"Factors":{"Treatment":"Heart tissue vehicle with TAC surgery"},
"Additional sample data":{"Sample Name":"Vehicle TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02116",
"Factors":{"Treatment":"Heart tissue SLU915 with sham surgery"},
"Additional sample data":{"Sample Name":"SLU915 Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02117",
"Factors":{"Treatment":"Heart tissue SLU915 with sham surgery"},
"Additional sample data":{"Sample Name":"SLU915 Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02118",
"Factors":{"Treatment":"Heart tissue SLU915 with sham surgery"},
"Additional sample data":{"Sample Name":"SLU915 Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02119",
"Factors":{"Treatment":"Heart tissue SLU915 with sham surgery"},
"Additional sample data":{"Sample Name":"SLU915 Sham"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02121",
"Factors":{"Treatment":"Heart tissue SLU915 with TAC surgery"},
"Additional sample data":{"Sample Name":"SLU915 TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02122",
"Factors":{"Treatment":"Heart tissue SLU915 with TAC surgery"},
"Additional sample data":{"Sample Name":"SLU915 TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02123",
"Factors":{"Treatment":"Heart tissue SLU915 with TAC surgery"},
"Additional sample data":{"Sample Name":"SLU915 TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02125",
"Factors":{"Treatment":"Heart tissue SLU915 with TAC surgery"},
"Additional sample data":{"Sample Name":"SLU915 TAC"}
},
{
"Subject ID":"-",
"Sample ID":"WASH-02120",
"Factors":{"Treatment":"Heart tissue SLU915 with TAC surgery"},
"Additional sample data":{"Sample Name":"SLU915 TAC"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Heart tissue were freshly isolated from experimental mice and then flash-frozen in liquid N2","SAMPLE_TYPE":"Heart"},

"TREATMENT":{"TREATMENT_SUMMARY":"Mice were subjected to 6-week Sham or Transverse aortic constriction (TAC) surgery, and treated with vehicle or SLU-PP-915 (10% Cremophor-10% DMSO-80% PBS) twice a day at ZT0 and ZT12 at the dose of 25mg/kg."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Samples were prepared using the automated MicroLab STAR® system from Hamilton Company. Several recovery standards were added prior to the first step in the extraction process for QC purposes. To remove protein, dissociate small molecules bound to protein or trapped in the precipitated protein matrix, and to recover chemically diverse metabolites, proteins were precipitated with methanol under vigorous shaking for 2 min (Glen Mills GenoGrinder 2000) followed by centrifugation. The resulting extract was divided into five fractions: two for analysis by two separate reverse phase (RP)/UPLC-MS/MS methods with positive ion mode electrospray ionization (ESI), one for analysis by RP/UPLC-MS/MS with negative ion mode ESI, one for analysis by HILIC/UPLC-MS/MS with negative ion mode ESI, and one sample was reserved for backup. Samples were placed briefly on a TurboVap® (Zymark) to remove the organic solvent. The sample extracts were stored overnight under nitrogen before preparation for analysis.","SAMPLEPREP_PROTOCOL_FILENAME":"SLU_Heart_Metabolomics_method.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"Low pH Lipophilic (LC/MS Pos late)","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Waters Acquity","COLUMN_NAME":"Waters ACQUITY UPLC BEH Amide (100 x 2.1mm,1.7um)","SOLVENT_A":"-","SOLVENT_B":"-","FLOW_GRADIENT":"-","FLOW_RATE":"-","COLUMN_TEMPERATURE":"-","METHODS_FILENAME":"SLU_Heart_Metabolomics_method.pdf"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"SLU_Heart_Metabolomics_method.pdf"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"Other","ION_MODE":"POSITIVE","MS_COMMENTS":"Metabolon (LC/MS Pos late)"},

"MS_METABOLITE_DATA":{
"Units":"log transformed data",

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}

}