{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000618","ANALYSIS_ID":"AN000948","VERSION":"1","CREATED_ON":"June 7, 2017, 1:11 pm"},

"PROJECT":{"PROJECT_TITLE":"Follicular fluid Metabolomics","PROJECT_TYPE":"MS qualitative analysis","PROJECT_SUMMARY":"Metabolomics profiling of follicular fluid samples from patients undergoing in vitro fertilization treatment","INSTITUTE":"Sao Paulo Federal University","DEPARTMENT":"Department of Surgery, Division of Urology, Human Reproduction Section","LABORATORY":"Center of research in Urology","LAST_NAME":"Bertuccez Cordeiro","FIRST_NAME":"Fernanda","ADDRESS":"Rua Embau, 231, Vila Clementino, Sao Paulo, São Paulo, 04039-060, Brazil","EMAIL":"fernandabertuccez85@gmail.com","PHONE":"5511996667402","FUNDING_SOURCE":"National Council for Scientific and Technological Development (CNPq - Brazil)"},

"STUDY":{"STUDY_TITLE":"Metabolomic Profiling of Follicular Fluid from Patients with Polycystic Ovary Syndrome and Hyper Response to In Vitro Fertilization Treatment","STUDY_TYPE":"MS quallitative analysis","STUDY_SUMMARY":"The present study consisted in a metabolomic approach in follicular fluid samples from patients with polycystic ovary syndrome and hyper response to in vitro fertilization treatment.","INSTITUTE":"Sao Paulo Federal University","DEPARTMENT":"Department of Surgery, Division of Urology, Human Reproduction Section","LABORATORY":"Center of research in Urology","LAST_NAME":"Cordeiro","FIRST_NAME":"Fernanda","ADDRESS":"Rua Embau, 231, Vila Clementino","EMAIL":"fernandabertuccez85@gmail.com","PHONE":"11996667402","NUM_GROUPS":"3","TOTAL_SUBJECTS":"81","NUM_FEMALES":"81"},

"SUBJECT":{"SUBJECT_TYPE":"Human Follicular Fluid","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","GENDER":"female","HUMAN_EXCLUSION_CRITERIA":"cancer, endometriosis, premature ovarian failure"},
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"Subject ID":"-",
"Sample ID":"QC_HR_11",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR41_1",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR41_2",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR42_1",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR42_2",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR43_1",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR43_2",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR44_1",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"HR44_2",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_HR_12",
"Factors":{"Condition":"Hyper Responder"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_3",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP01_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP01_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP02_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP02_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP03_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP03_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP04_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP04_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP05_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP05_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_4",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP06_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP06_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP07_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP07_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP08_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP08_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP09_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP09_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP10_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP10_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_5",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP11_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP11_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP12_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP12_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP13_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP13_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP14_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP14_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP15_1",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"SOP15_2",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
},
{
"Subject ID":"-",
"Sample ID":"QC_SOP_6",
"Factors":{"Condition":"Polycystic Ovary Syndrome"},
"Additional sample data":{"Type of extract collected":"polar and apolar phases"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"The patients were initially undergoing to controlled ovarian stimulation, from which follicular fluid samples were collected."},

"TREATMENT":{"TREATMENT_SUMMARY":"Follicular fluid samples were centrifuged at 800 × g for 10 minutes to separate the fluid from follicular cells and the samples were maintained frozen in -20 °C until the metabolites extraction."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"50 µL of follicular fluid samples were submitted to Bligh & Dyer protocol.","EXTRACTION_METHOD":"BLIGH & DYER","SAMPLE_RESUSPENSION":"5 µL of ressuspended sample in 100 µL of ACN:H20 (1:1 - v:v)"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"Liquid Chromatography was performed by using a chromatographer Acquity with a reverse phase column (Acquity UPCL HSS 1,8 µm, 2.1x100 mm - Waters Corporation, MA, USA), at 35 °C. The solvents for the elution were: A- H2O with formic acid 0.1% and B- ACN with formic acid 0.1%. The initial gradient was composed of 80% of A and 20% of B, during 1 minute. Next, the gradient was linearly changed for 50% of A and 50% of B, during the next minute. In the sequence, the gradient was changed for 35% of A and 65% of B during 2 minutes. The gradient was then inverted, considering 20% of A and 80% of B, during 3 minutes. For the next 10 minutes, the gradient was 3% of A and 97% of B. The initial condition was reestablished for the column washing during 1 minute. The total run time was 17 minutes and the solvents flux was 0.5 mL/min and the total amount of sample used per run was 5 µL.","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Ultima Quadrupole-Time of Flight - Waters Corporation","COLUMN_NAME":"Waters Acquity HSS T3 (100 x 2.1mm, 1.8um)","FLOW_RATE":"0.5 mL/min","COLUMN_TEMPERATURE":"35 °C","SOLVENT_A":"H2O with formic acid 0.1%","SOLVENT_B":"ACN with formic acid 0.1%"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Waters Ultima QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_RESULTS_FILE":"ST000618_AN000948_Results.txt UNITS:mass intensity"}

}