Metabolomics Structure Database

 
MW REGNO: 37559
Common Name:Deoxyribose 5-phosphate
Systematic Name:{[(2R,3S,5R)-3,5-dihydroxyoxolan-2-yl]methoxy}phosphonic acid
RefMet Name:Deoxyribose 5-phosphate
Synonyms: [PubChem Synonyms]
Exact Mass:
214.0242 (neutral)    Calculate m/z:
Formula:C5H11O7P
InChIKey:KKZFLSZAWCYPOC-VPENINKCSA-N
ClassyFire superclass:Organic oxygen compounds [C0004603]
ClassyFire class:Organooxygen compounds [C0000323]
ClassyFire subclass:Carbohydrates and carbohydrate conjugates [C0000011]
ClassyFire direct parent:Pentose phosphates [C0002259]
SMILES:O=P(O)(O)OC[C@H]1O[C@@H](O)C[C@@H]1O
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:45934311
CHEBI ID:16132
HMDB ID:HMDB0001031
KEGG ID:C00673
Chemspider ID:25057464
METLIN ID:5956
Plant Metabolite Hub(Pmhub):MS000001087

Calculated physicochemical properties (?):

Heavy Atoms: 13  
Rings: 1  
Aromatic Rings: 0  
Rotatable Bonds: 3  
van der Waals Molecular volume: 164.06 Å3 molecule-1  
Toplogical Polar Sufrace Area: 118.52 Å2 molecule-1  
Hydrogen Bond Donors: 4  
Hydrogen Bond Acceptors: 7  
logP: 0.05  
Molar Refractivity: 41.25  
Fraction sp3 Carbons: 1.00  
sp3 Carbons: 5  

Human Pathway links:

HMDB and KEGG pathways containing this metabolite

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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