Metabolomics Structure Database

 
MW REGNO: 37398
Common Name:Indole
Systematic Name:1H-indole
RefMet Name:Indole
Synonyms: [PubChem Synonyms]
Exact Mass:
117.0578 (neutral)    Calculate m/z:
Formula:C8H7N
InChIKey:SIKJAQJRHWYJAI-UHFFFAOYSA-N
ClassyFire superclass:Organoheterocyclic compounds [C0000002]
ClassyFire class:Indoles and derivatives [C0000211]
ClassyFire subclass:Indoles [C0002497]
ClassyFire direct parent:Indoles [C0002497]
Massbank MS spectra:View MS spectra
NP-MRD NMR spectra:View NMR spectra
SMILES:c1ccc2c(c1)cc[nH]2
Studies:Available studies (via RefMet name)

Select appropriate tab below to view additional details:

External database links:

PubChem CID:798
CHEBI ID:16881
HMDB ID:HMDB0000738
KEGG ID:C00463
Chemspider ID:776
METLIN ID:286
BMRB ID:bmse000097
MetaCyc ID:INDOLE
Natural Products Atlas ID:NP011269
NP-MRD ID(NMR):NP0001127
EPA CompTox DB:DTXCID40737
Plant Metabolite Hub(Pmhub):MS000006921

Calculated physicochemical properties (?):

Heavy Atoms: 9  
Rings: 2  
Aromatic Rings: 2  
Rotatable Bonds: 0  
van der Waals Molecular volume: 100.88 Å3 molecule-1  
Toplogical Polar Sufrace Area: 15.79 Å2 molecule-1  
Hydrogen Bond Donors: 1  
Hydrogen Bond Acceptors: 0  
logP: 2.01  
Molar Refractivity: 38.23  
Fraction sp3 Carbons: 0.00  
sp3 Carbons: 0  

Human Pathway links:

REACTOME pathways containing this metabolite

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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