Summary of Study ST002139

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001354. The data can be accessed directly via it's Project DOI: 10.21228/M8PX25 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002139
Study TitleUntargeted analysis of Gastrolobium bilobum
Study SummaryGastrolobium samples were analyzed in effort to find metaboloic synthesis pathway leading to fluoroacetate.
Institute
University of California, Davis
Last NameFolz
First NameJacob
Address1 Shields Ave
Emailjfolz@ucdavis.edu
Phone7155636311
Submit Date2022-04-13
Raw Data AvailableYes
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2022-05-02
Release Version1
Jacob Folz Jacob Folz
https://dx.doi.org/10.21228/M8PX25
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR001354
Project DOI:doi: 10.21228/M8PX25
Project Title:Gastrolobium bilobum LC-MS/MS analysis
Project Summary:This study was carried out to investigate metabolism and possible routes of synthesis of fluoroacetate.
Institute:University of California, Davis
Last Name:Folz
First Name:Jacob
Address:1 Shields Ave
Email:jfolz@ucdavis.edu
Phone:7155636311

Subject:

Subject ID:SU002224
Subject Type:Plant
Subject Species:Gastrolobium bilobum

Factors:

Subject type: Plant; Subject species: Gastrolobium bilobum (Factor headings shown in green)

mb_sample_id local_sample_id Tissue factor Treatment factor
SA205384Gastrolobium_HILICneg_01Bacteria Extract No Treatment
SA205385Gastrolobium_HILICneg_46Gastrolobium Bottom Leaf No Treatment
SA205386Gastrolobium_HILICneg_47Gastrolobium Bottom Leaf No Treatment
SA205387Gastrolobium_HILICneg_48Gastrolobium Bottom Leaf No Treatment
SA205390Gastrolobium_HILICneg_55Gastrolobium Leaf 107.1 ng/ml Fluoroacetate spiked
SA205391Gastrolobium_HILICneg_56Gastrolobium Leaf 107.1 ng/ml Fluoroacetate spiked
SA205388Gastrolobium_HILICneg_52Gastrolobium Leaf 10.7 ng/ml Fluoroacetate spiked
SA205389Gastrolobium_HILICneg_51Gastrolobium Leaf 10.7 ng/ml Fluoroacetate spiked
SA205394Gastrolobium_HILICneg_58Gastrolobium Leaf 357.1 ng/ml Fluoroacetate spiked
SA205395Gastrolobium_HILICneg_57Gastrolobium Leaf 357.1 ng/ml Fluoroacetate spiked
SA205392Gastrolobium_HILICneg_53Gastrolobium Leaf 35.7 ng/ml Fluoroacetate spiked
SA205393Gastrolobium_HILICneg_54Gastrolobium Leaf 35.7 ng/ml Fluoroacetate spiked
SA205396Gastrolobium_HILICneg_20Gastrolobium Leaf C13 Acetate
SA205397Gastrolobium_HILICneg_14Gastrolobium Leaf C13 Acetate
SA205398Gastrolobium_HILICneg_22Gastrolobium Leaf C13 Acetate
SA205399Gastrolobium_HILICneg_19Gastrolobium Leaf C13 Adenosine
SA205400Gastrolobium_HILICneg_17Gastrolobium Leaf C13 Adenosine
SA205401Gastrolobium_HILICneg_16Gastrolobium Leaf C13 Adenosine
SA205402Gastrolobium_HILICneg_21Gastrolobium Leaf C13 Serine
SA205403Gastrolobium_HILICneg_13Gastrolobium Leaf C13 Serine
SA205404Gastrolobium_HILICneg_05Gastrolobium Leaf FE 100uM NaF
SA205405Gastrolobium_HILICneg_02Gastrolobium Leaf FE 100uM NaF
SA205406Gastrolobium_HILICneg_03Gastrolobium Leaf FE 100uM NaF
SA205407Gastrolobium_HILICneg_06Gastrolobium Leaf FE 100uM NaF
SA205408Gastrolobium_HILICneg_04Gastrolobium Leaf FE 100uM NaF
SA205409Gastrolobium_HILICneg_09Gastrolobium Leaf FE 100uM NaF
SA205410Gastrolobium_HILICneg_12Gastrolobium Leaf FE 100uM NaF
SA205411Gastrolobium_HILICneg_11Gastrolobium Leaf FE 100uM NaF
SA205412Gastrolobium_HILICneg_10Gastrolobium Leaf FE 100uM NaF
SA205413Gastrolobium_HILICneg_08Gastrolobium Leaf FE 100uM NaF
SA205414Gastrolobium_HILICneg_07Gastrolobium Leaf FE 100uM NaF
SA205415Gastrolobium_HILICneg_50Gastrolobium Leaf No Treatment
SA205416Gastrolobium_HILICneg_49Gastrolobium Leaf No Treatment
SA205417Gastrolobium_HILICneg_15Gastrolobium Leaf No Treatment
SA205418Gastrolobium_HILICneg_18Gastrolobium Leaf No Treatment
SA205419Gastrolobium_HILICneg_38Gastrolobium Root No Treatment
SA205420Gastrolobium_HILICneg_39Gastrolobium Root No Treatment
SA205421Gastrolobium_HILICneg_37Gastrolobium Root No Treatment
SA205422Gastrolobium_HILICneg_41Gastrolobium Stem No Treatment
SA205423Gastrolobium_HILICneg_42Gastrolobium Stem No Treatment
SA205424Gastrolobium_HILICneg_40Gastrolobium Stem No Treatment
SA205425Gastrolobium_HILICneg_45Gastrolobium Top Leaf No Treatment
SA205426Gastrolobium_HILICneg_43Gastrolobium Top Leaf No Treatment
SA205427Gastrolobium_HILICneg_44Gastrolobium Top Leaf No Treatment
SA205428Gastrolobium_HILICneg_26Method Blank No Treatment
SA205429Gastrolobium_HILICneg_23Method Blank No Treatment
SA205430Gastrolobium_HILICneg_24Method Blank No Treatment
SA205431Gastrolobium_HILICneg_25Method Blank No Treatment
SA205432Gastrolobium_HILICneg_27Method Blank No Treatment
SA205433Gastrolobium_HILICneg_61Pooled Sample No Treatment
SA205434Gastrolobium_HILICneg_60Pooled Sample No Treatment
SA205435Gastrolobium_HILICneg_59Pooled Sample No Treatment
SA205436Gastrolobium_HILICneg_36Pooled Sample No Treatment
SA205437Gastrolobium_HILICneg_33Pooled Sample No Treatment
SA205438Gastrolobium_HILICneg_34Pooled Sample No Treatment
SA205439Gastrolobium_HILICneg_35Pooled Sample No Treatment
SA205440Gastrolobium_HILICneg_28Standard Curve 0 ng/ml Standards
SA205441Gastrolobium_HILICneg_31Standard Curve 100 ng/ml Standards
SA205443Gastrolobium_HILICneg_32Standard Curve 250 ng/ml Standards
SA205442Gastrolobium_HILICneg_30Standard Curve 25 ng/ml Standards
SA205444Gastrolobium_HILICneg_29Standard Curve 5 ng/ml Standards
Showing results 1 to 61 of 61

Collection:

Collection ID:CO002217
Collection Summary:Plants were grown in presence or absence of sodium fluoride or given isotopically labeled precursors to test possible pathways towards fluoroacetate synthesis.
Sample Type:Plant

Treatment:

Treatment ID:TR002236
Treatment Summary:Plants were grown in presence or absence of sodium fluoride, or fed isotopically labeled chemicals. Different plant tissues were collected from these plants.

Sample Preparation:

Sampleprep ID:SP002230
Sampleprep Summary:Plant tissues were frozen, ground, and extracted with biphasic MTBE water and acetonitrile. The aqueous phase was collected for analysis.

Combined analysis:

Analysis ID AN003500
Analysis type MS
Chromatography type HILIC
Chromatography system Thermo Vanquish
Column Waters Acquity BEH (50 mm length × 2.1 mm i.d.; 1.7 µm particle size)
MS Type ESI
MS instrument type Orbitrap
MS instrument name Thermo Orbitrap Exploris 240
Ion Mode NEGATIVE
Units Peak Area

Chromatography:

Chromatography ID:CH002586
Chromatography Summary:HILIC chromatography
Instrument Name:Thermo Vanquish
Column Name:Waters Acquity BEH (50 mm length × 2.1 mm i.d.; 1.7 µm particle size)
Chromatography Type:HILIC

MS:

MS ID:MS003260
Analysis ID:AN003500
Instrument Name:Thermo Orbitrap Exploris 240
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:Most samples have only MS1 data. Pooled samples were analyzed with iterative exclusion MS/MS on pooled samples.
Ion Mode:NEGATIVE
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