Summary of Study ST002020

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001282. The data can be accessed directly via it's Project DOI: 10.21228/M80Q51 This work is supported by NIH grant, U2C- DK119886.

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Study IDST002020
Study TitleTIPs Metabolomics (urine)
Study SummaryA prospective cohort of 38 European (EA) and African American (AA) omnivorous females were recruited. Samples were collected pre-intervention while subjects consumed habitual animal-based diet, and following 4 days of interventional vegetarian diet.
Institute
Vanderbilt University Medical Center
Last NameFerguson
First NameJane
Address2220 Pierce Ave, PRB 354, Nashville, TN, 37232, USA
Emailjane.f.ferguson@vumc.org
Phone6158759896
Submit Date2021-12-13
Analysis Type DetailLC-MS
Release Date2022-01-17
Release Version1
Jane Ferguson Jane Ferguson
https://dx.doi.org/10.21228/M80Q51
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR001282
Project DOI:doi: 10.21228/M80Q51
Project Title:TIPs Metabolomics
Project Summary:Healthy omnivorous women underwent a short-term dietary intervention. Plasma and urine samples were collected before and after the 4-day vegetarian diet.
Institute:Vanderbilt University Medical Center
Last Name:Ferguson
First Name:Jane
Address:2220 Pierce Ave, PRB 354, Nashville, TN, 37232, USA
Email:jane.f.ferguson@vumc.org
Phone:6158759896

Subject:

Subject ID:SU002102
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Gender:Female
Species Group:Mammals

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Diet Study Phase
SA189277MB-13_V2Post 1
SA189278MB-12_V2Post 1
SA189279MB-11_V2Post 1
SA189280MB-14_V2Post 1
SA189281MB-09_V2Post 1
SA189282MB-15_V2Post 1
SA189283MB-19_V2Post 1
SA189284MB-17_V2Post 1
SA189285MB-16_V2Post 1
SA189286MB-08_V2Post 1
SA189287MB-10_V2Post 1
SA189288MB-04_V2Post 1
SA189289MB-03_V2Post 1
SA189290MB-02_V2Post 1
SA189291MB-06_V2Post 1
SA189292MB-05_V2Post 1
SA189293MB-07_V2Post 1
SA189294MB-38_V2Post 2
SA189295MB-25_V2Post 2
SA189296MB-24_V2Post 2
SA189297MB-35_V2Post 2
SA189298MB-33_V2Post 2
SA189299MB-22_V2Post 2
SA189300MB-23_V2Post 2
SA189301MB-26_V2Post 2
SA189302MB-37_V2Post 2
SA189303MB-30_V2Post 2
SA189304MB-32_V2Post 2
SA189305MB-31_V2Post 2
SA189306MB-36_V2Post 2
SA189307MB-29_V2Post 2
SA189308MB-27_V2Post 2
SA189309MB-34_V2Post 2
SA189310MB-21_V2Post 2
SA189311MB-20_V2Post 2
SA189312MB-09_V1Pre 1
SA189313MB-10_V1Pre 1
SA189314MB-11_V1Pre 1
SA189315MB-13_V1Pre 1
SA189316MB-08_V1Pre 1
SA189317MB-07_V1Pre 1
SA189318MB-03_V1Pre 1
SA189319MB-04_V1Pre 1
SA189320MB-05_V1Pre 1
SA189321MB-06_V1Pre 1
SA189322MB-14_V1Pre 1
SA189323MB-12_V1Pre 1
SA189324MB-19_V1Pre 1
SA189325MB-02_V1Pre 1
SA189326MB-16_V1Pre 1
SA189327MB-17_V1Pre 1
SA189328MB-15_V1Pre 1
SA189329MB-23_V1Pre 2
SA189330MB-36_V1Pre 2
SA189331MB-29_V1Pre 2
SA189332MB-37_V1Pre 2
SA189333MB-20_V1Pre 2
SA189334MB-22_V1Pre 2
SA189335MB-38_V1Pre 2
SA189336MB-35_V1Pre 2
SA189337MB-24_V1Pre 2
SA189338MB-26_V1Pre 2
SA189339MB-31_V1Pre 2
SA189340MB-21_V1Pre 2
SA189341MB-32_V1Pre 2
SA189342MB-25_V1Pre 2
SA189343MB-34_V1Pre 2
SA189344MB-27_V1Pre 2
SA189345MB-33_V1Pre 2
SA189346MB-30_V1Pre 2
Showing results 1 to 70 of 70

Collection:

Collection ID:CO002095
Collection Summary:Whole blood (EDTA tube) and midstream urine samples were collected in the early mornings of study days 1 and 6 with subjects in a 10-hour fasted state.
Sample Type:Urine

Treatment:

Treatment ID:TR002114
Treatment Summary:All participants completed a dietary intervention. Vegetarian menus encompassing four days of 3 meals and 2 snacks per day were developed. Menus were designed to be a major shift from habitual omnivorous intakes by eliminating all meat, fish, poultry, eggs, and dairy products.

Sample Preparation:

Sampleprep ID:SP002108
Sampleprep Summary:Urine samples were prepared for metabolomics anayses at Metabolon Inc.

Combined analysis:

Analysis ID AN003290
Chromatography ID CH002430
MS ID MS003061
Analysis type MS
Chromatography type Reversed phase
Chromatography system none
Column none
MS Type ESI
MS instrument type Other
MS instrument name Thermo Q Exactive Orbitrap
Ion Mode UNSPECIFIED
Units osmolality normalized scaled imputed

Chromatography:

Chromatography ID:CH002430
Instrument Name:none
Column Name:none
Chromatography Type:Reversed phase

MS:

MS ID:MS003061
Analysis ID:AN003290
Instrument Name:Thermo Q Exactive Orbitrap
Instrument Type:Other
MS Type:ESI
MS Comments:Extracts were divided into fractions for analysis: two for analysis by two separate reverse phase (RP)/UPLC-MS/MS methods with positive ion mode electrospray ionization (ESI), one for analysis by RP/UPLC-MS/MS with negative ion mode ESI, and one for analysis by HILIC/UPLC-MS/MS with negative ion mode ESI.
Ion Mode:UNSPECIFIED
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